SIGNET User’s Manual

• Reference to SIGNET
• System Requirement
• Quick Installation of SIGNET
  • Installation of Required Packages
• Introduction
• Quick Start
  • 1. Prepare the DataSet
  • 2. Set configuration
  • 3. Genotype Preprocess
  • 4. Gene Expression Preprocess
  • 5. cis-eQTL Analysis
  • 6. Network Analysis
  • 7. Network Visualization
• Command Guide
  • Settings
    • Usage
    • Description
    • Example
    • Error input handling
  • Transcript-prep
    • Usage
    • Description
    • Result files
    • Example
    • Usage
    • Description
    • Example
  • Geno-prep
    • Usage
    • Description
    • Example
    • Result files
    • Usage
    • Description
    • Example
    • Result files
  • Adj
    • Usage
    • Description
    • Example
    • Usage
    • Description
    • Example
  • Cis-eqtl
    • Usage
    • Description
    • Result files
    • Example
  • Network
    • Usage
    • Description
    • Result files
    • Example
  • Netvis
    • Usage
    • Description
    • Result files
    • Example
• Appendix
  • Configuration File
  • File Structure